species:   Rhsol
pid:       PID0509
parent:    Rhi-milR-85
paralog:   
locus:     KB317710.1:528516-528591
matures:   ['GGUGACUGUGGCUCUGAAGAGG', 'CUCUUGCUACUGCCGUUUGUUGCUC']
srr:       SRR1994876
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994876.cram KB317710.1:528516-528591

4 out of bounds
44 alignments
29 proper strand
25 stranded perfect matches

       *************************         ****************************       
UGAUCGUGGUGGUGACUGUGGCUCUGAAGAGGCAGUCUCAGCACUCUUGCUACUGCCGUUUGUUGCUCCUGGAUUC
.((((..((.((((((..((((....(((((((.......)).)))))......))))...))))))))..)))).
----------GGUGACUGUGGCUCUGAAGAGG-------------------------------------------- l=22 a=0 c
-------------------------------------------CUCUUGCUACUGCCGUUUGUUGCUC-------- l=25 a=0 c*
---------UGGUGACUGUGGCUCUGAAGAGG-------------------------------------------- l=23 a=12 ma
-------------------------------------------CUCUUGCUACUGCCGUUUGUUGCUCC------- l=26 a=0 ma*

------------UGACUGUGGCUCUGAAGAGG-------------------------------------------- l=20 a=1 
------------UGACUGUGGCUCUGAAGAGGu------------------------------------------- l=21 a=1 
------------UGACUGUGGCUCUGAAGAGGCA------------------------------------------ l=22 a=7 
------------UGACUGUGGCUCUGAAGAGGCg------------------------------------------ l=22 a=1 
------------UGACUGUGGCUCUGAAGAGGCAG----------------------------------------- l=23 a=2 
------------UGACUGUGGCUCUGAAGAGGCAu----------------------------------------- l=23 a=1 
---------UGGUGACUGUGGCUCUGAAGA---------------------------------------------- l=21 a=1 
---------UGGUGACUGUGGCUCUGAAGAGG-------------------------------------------- l=23 a=12 (ma)
---------UGGUGACUGUGGCUCUGAAGAGGu------------------------------------------- l=24 a=1 
--------GUGGUGACUGUGGCU----------------------------------------------------- l=15 a=1 
-----GUGGUGGUGACUGUGGC------------------------------------------------------ l=17 a=1 

mb-01011
ax-1001011
ku-01
ss-111110101100
fn-101
